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Recent Posts
- Local installation of DeepTMHMM December 3, 2025
- A simple solution for continuous, real-time monitoring with the Seabird SUNAV2 over RS232 March 22, 2025
- New postdoctoral position in pathogen ecology September 25, 2024
- Seeking postdoc in phytoplankton ecology August 27, 2024
- Recent blog post by PhD student Beth Connors February 13, 2024
- New paper: Antarctic metagenomes reveal novel microbial diversity May 19, 2023
- New postdoctoral research opportunity! April 7, 2023
- Alignment and phylogenetic inference with hmmalign and RAxML-ng May 31, 2022
- New paper on using machine learning to predict biogeochemistry from microbial community structure February 12, 2022
- Lab manager position open! January 15, 2022
Author Archives: Jeff
On academia
I don’t ordinarily post job listings on this blog, but this is a great opportunity for a talented student interested in environmental microbiology. Don’t be thrown off by the location, Fairbanks is a top notch school with a world class … Continue reading
Posted in Uncategorized
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A better backup
I’m continuing the theme of cost-saving lab tricks (see this post on the topic). Over the summer my laptop died on me. While putting everything back together I couldn’t find my key for the commercial synchronization software (Allway Sync) that … Continue reading
Posted in Research
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Frost flowers in the news, continued…
Many thanks to Robert Krulwich, co host of NPR’s RadioLab, for a great article on frost flowers. Reading through the comments I can see that there is a lot of public interest in this phenomenon. I want to take the … Continue reading
A work around for expensive stir plates
I have an experiment that I want to do that involves growing bacteria in relatively large volumes (around 10 L) in a cold room for several weeks. Typically in this sort of experiment you stir the cultures with a magnetic … Continue reading
Frost flowers in the news
Well, at least on another blog. Thanks to Dr. Kim Martini, a physical oceanographer at the University of Alaska at Fairbanks, for including linked photos from this blog in an article on frost flowers for Deep Sea News. Dr. Martini’s … Continue reading
Posted in Research
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An Arctic MOSAIC
Back in June I had the opportunity to attend two workshops hosted by NOAA in Boulder, CO. The first workshop focused on bio-chemical-physical processes that affect the Arctic marine boundary layer (the lowest layer of the atmosphere). The boundary layer … Continue reading
Posted in MOSAiC, Research
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Merging a phylogenetic tree with a heatmap in R
***UPDATE*** I was recently introduced to a great tool for working with phylogenetic trees that can do something similar to what I describe below (and a whole lot more). Check it out at http://itol.embl.de/. ****** It seemed like a simple … Continue reading
Posted in Research
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New blog purpose
This blog was originally intended to share the experiences of our group while we conducted field work in Antarctica during the Austral winter/spring of 2011. The further I get into analysis however, the more I find myself needing a place … Continue reading
Posted in Research
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And that’s it!
In thirty minutes we will catch a ride to the airfield for our flight back to McMurdo. It’s a good day to fly home, warm with a clear sunny sky. It’s hard to believe how nice it is after yesterday, … Continue reading
Posted in McMurdo 2011 field season
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Fourth time’s the charm
Made it! We had great weather Friday and no trouble reaching Taylor Glacier. The whole Taylor Valley is a remarkable place, but it was really something to stand on top of the glacier itself and take it all in. The … Continue reading
Posted in McMurdo 2011 field season
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