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Recent Posts
- Local installation of DeepTMHMM December 3, 2025
- A simple solution for continuous, real-time monitoring with the Seabird SUNAV2 over RS232 March 22, 2025
- New postdoctoral position in pathogen ecology September 25, 2024
- Seeking postdoc in phytoplankton ecology August 27, 2024
- Recent blog post by PhD student Beth Connors February 13, 2024
- New paper: Antarctic metagenomes reveal novel microbial diversity May 19, 2023
- New postdoctoral research opportunity! April 7, 2023
- Alignment and phylogenetic inference with hmmalign and RAxML-ng May 31, 2022
- New paper on using machine learning to predict biogeochemistry from microbial community structure February 12, 2022
- Lab manager position open! January 15, 2022
Author Archives: Jeff
AbSciCon session on life in high salt habitats
Abstract submissions are open for AbSciCon 2019! You can check out the full selection of sessions here, however, I’d like to draw your attention toward the session Salty Goodness: Understanding life, biosignature preservation, and brines in the Solar System. This … Continue reading
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South Bay Saltworks
This is a quick post of a few photos from our trip to the South Bay Saltworks earlier this week. Thanks to PhD students Natalia, Emelia, and Srishti for getting up early to go play in the mud, and to … Continue reading
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Saturday morning at the office
Sometimes working weekends can be a lot of fun. Last Saturday morning we carried out the second Scripps Institution of Oceanography visit by undergraduate biology majors from National University for our NSF-funded project CURE-ing Microbes on Ocean Plastics. We recovered … Continue reading
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Introducing OAST
This post has been a long time in coming! I’m happy to announce that our Oceans Across Space and Time (OAST) proposal to the NASA Astrobiology Program has been funded, launching a 5 year, 8+ institution effort to improve life … Continue reading
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NASA Postdoctoral Program opportunity
A new NASA Postdoctoral Program (NPP) opportunity was posted today for our Oceans Across Space and Time (OAST) initiative. What’s OAST? I can’t tell you yet, because the relevant press releases have been stuck in purgatory for several weeks. Hopefully … Continue reading
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Postdoctoral researcher sought in bioinformatics/predictive analytics
We have an opening for a postdoctoral scholar in the area of bioinformatics and predictive analytics. The ideal candidate will have demonstrated expertise in one of these two areas and a strong interest in the other. Possible areas of expertise … Continue reading
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Separating bacterial and archaeal reads for analysis with paprica
One of the most popular primer sets for 16S rRNA gene amplicon analysis right now is the 515F/806R set. One of the advantages of this pair is that it amplifies broadly across the domains Archaea and Bacteria. This reduces by … Continue reading
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We’re joining MOSAiC!
This has been a (rare) good week for funding decisions. A loooooong time ago when I was a third year PhD student I wrote a blog post that mentioned the Multidisciplinary drifting Observatory for the Study of Arctic Climate (MOSAiC) … Continue reading
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CURE-ing microbes on ocean plastic
I was excited to learn today that our proposal CURE-ing microbes on ocean plastic, led by collaborators Ana Barral and Rachel Simmons at National University, was just funded by the National Science Foundation through the Hispanic Serving Institutions (HSI) program. … Continue reading
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A practical lesson in marine metals
This week Alyssa Demko from the Jenkins Lab and I dove to make repairs on our sample pump intake on the SIO pier. Very soon the pump will supply water to our membrane inlet mass spectrometer and biological sampling manifold, … Continue reading
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