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	<title>OAST &#8211; The Bowman Lab</title>
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	<description>Marine Microbial Ecology</description>
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		<title>New paper on microbial life in hypersaline environments</title>
		<link>https://www.polarmicrobes.org/new-paper-on-microbial-life-in-hypersaline-environments/</link>
					<comments>https://www.polarmicrobes.org/new-paper-on-microbial-life-in-hypersaline-environments/#respond</comments>
		
		<dc:creator><![CDATA[Jeff]]></dc:creator>
		<pubDate>Fri, 12 Mar 2021 05:51:43 +0000</pubDate>
				<category><![CDATA[OAST]]></category>
		<category><![CDATA[Research]]></category>
		<category><![CDATA[halophile]]></category>
		<category><![CDATA[south bay salt works]]></category>
		<guid isPermaLink="false">http://www.polarmicrobes.org/?p=3226</guid>

					<description><![CDATA[Congrats to Benjamin Klempay for his first, first-authored publication in the lab! (wow, didn&#8217;t I just write that??) Benjamin is part of the Oceans Across Space and Time (OAST) project and his paper, Microbial diversity and activity in Southern California &#8230; <a href="https://www.polarmicrobes.org/new-paper-on-microbial-life-in-hypersaline-environments/">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
										<content:encoded><![CDATA[
<p>Congrats to <a href="https://www.polarmicrobes.org/people/" data-type="page" data-id="1928">Benjamin Klempay</a> for his first, first-authored publication in the lab! (wow, didn&#8217;t I just write that??)  Benjamin is part of the <a href="https://oast.eas.gatech.edu/">Oceans Across Space and Time</a> (OAST) project and his paper, <em><a href="https://sfamjournals.onlinelibrary.wiley.com/doi/full/10.1111/1462-2920.15440">Microbial diversity and activity in Southern California salter and bitterns: analogues for ancient ocean worlds</a></em>, appears in a special issue of the journal <em>Environmental Microbiology</em>.  In the paper Benjamin does a deep dive into the microbial diversity of the network of lakes that make up the <a href="https://en.wikipedia.org/wiki/South_Bay_Salt_Works">South Bay Salt Works</a>, a little known industrial site/wildlife refuge on San Diego Bay that also happens to be the oldest continually operating solar salt harvesting facility in the US.</p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img data-recalc-dims="1" fetchpriority="high" decoding="async" src="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/DSC_9277.jpg?resize=512%2C342&#038;ssl=1" alt="" class="wp-image-3228" width="512" height="342" srcset="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/DSC_9277-scaled.jpg?resize=1024%2C683&amp;ssl=1 1024w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/DSC_9277-scaled.jpg?resize=300%2C200&amp;ssl=1 300w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/DSC_9277-scaled.jpg?resize=768%2C512&amp;ssl=1 768w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/DSC_9277-scaled.jpg?resize=1536%2C1024&amp;ssl=1 1536w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/DSC_9277-scaled.jpg?resize=2048%2C1365&amp;ssl=1 2048w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/DSC_9277-scaled.jpg?w=1280&amp;ssl=1 1280w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/DSC_9277-scaled.jpg?w=1920&amp;ssl=1 1920w" sizes="(max-width: 512px) 100vw, 512px" /><figcaption>OAST team members Maggie Weng, Benjamin Klempay, and Peter Doran at the SBSW in 2020.</figcaption></figure></div>



<p>Our interest in hypersaline lakes &#8211; aside from that fact that they just really weird and fun environments to explore &#8211; is their value as analogues for evaporative environments on Mars and other ancient ocean worlds.  Once upon a time Mars was wet, and may not have been so dissimilar to many environments on Earth today.  As that water was lost the oceans, lakes, and wetlands were reduced by evaporation to saline lakes and ultimately salt pans.  These end-state evaporative environments are key targets for Martian exploration today.  Extremely salty lakes like those found at the Salt Works are a reasonable representation of the last potentially inhabited environments on the surface of Mars before it became too desiccated to support life.  Thus the signatures of ancient Martian life might bear some similarities to contemporary life in these lakes.</p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img data-recalc-dims="1" decoding="async" src="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/15-032.jpg?resize=493%2C493&#038;ssl=1" alt="" class="wp-image-3241" width="493" height="493" srcset="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/15-032.jpg?w=985&amp;ssl=1 985w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/15-032.jpg?resize=300%2C300&amp;ssl=1 300w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/15-032.jpg?resize=150%2C150&amp;ssl=1 150w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/15-032.jpg?resize=768%2C768&amp;ssl=1 768w" sizes="(max-width: 493px) 100vw, 493px" /><figcaption>From https://www.nasa.gov/press/2015/march/nasa-research-suggests-mars-once-had-more-water-than-earth-s-arctic-ocean.  Mars was once a wet world.  As it dried the remnant lakes and oceans would have become increasingly saline, eventually representing hypersaline environments like the lakes of the South Bay Salt Works.</figcaption></figure></div>



<p>The microbial diversity of hypersaline lakes has been studied in depth &#8211; as I mentioned before they&#8217;re weird and fun places to study &#8211; but Benjamin&#8217;s work looks at a couple of unexplored elements.  First, he didn&#8217;t restrict his analysis to sodium chloride lakes at the Salt Works (salterns) but also included magnesium chloride lakes (bitterns) that are thought to be too toxic for life (see a nice discussion of this in a recent OAST paper <a href="https://sfamjournals.onlinelibrary.wiley.com/doi/full/10.1111/1462-2920.15414" data-type="URL" data-id="https://sfamjournals.onlinelibrary.wiley.com/doi/full/10.1111/1462-2920.15414">here</a>).  He found an interesting pattern of microbial diversity across these lakes, with diversity decreasing as salinity decreases, then suddenly increasing in the magnesium chloride lakes.  The reason for this is the absence of microbial growth in those lakes.  Rather than hosting a specialized microbial community they collect microbes from dust, seaspray, and other sources (infall), and preserve this DNA but inactivating the enzymes that would normally degrade it.</p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img data-recalc-dims="1" decoding="async" src="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0005-m.jpg?resize=512%2C460&#038;ssl=1" alt="" class="wp-image-3243" width="512" height="460" srcset="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0005-m.jpg?resize=1024%2C920&amp;ssl=1 1024w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0005-m.jpg?resize=300%2C269&amp;ssl=1 300w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0005-m.jpg?resize=768%2C690&amp;ssl=1 768w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0005-m.jpg?resize=1536%2C1379&amp;ssl=1 1536w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0005-m.jpg?resize=2048%2C1839&amp;ssl=1 2048w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0005-m.jpg?w=1280&amp;ssl=1 1280w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0005-m.jpg?w=1920&amp;ssl=1 1920w" sizes="(max-width: 512px) 100vw, 512px" /><figcaption>Microbial diversity in salterns and bitterns.  Diversity <em>increases</em> below the known water activity limit for bacteria and archaea due to external inputs of new genetic material.  From Klempay et al. 2021.</figcaption></figure></div>



<p>Co-authors <a href="https://dekaslab.stanford.edu/">Anne Dekas</a> and Nestor Arandia-Gorostidi at Stanford also applied nano-SIMS to evaluate single-cell activity levels across the salinity (water activity) gradient.  Biomass can be very high in these lakes &#8211; 100 fold or more higher than seawater &#8211; so we assumed that activity would be high too.  The nice thing about nano-SIMS is that it evaluates activity on a per-cell basis.  Looked at in this way, most bacteria and archaea had surprisingly low levels of activity.   We&#8217;re still trying to understand exactly what this means and Anne and Nestor undertook an impressive array of experiments as part of our 2020 field effort to try to get to the bottom of it.  We think that the extraordinarily low levels of predation are partially responsible; the eukaryotic protists that typically prey on bacteria and archaea can&#8217;t grow at the salinity of the saltiest lakes at South Bay Salt Works.  Viruses, the other major source of mortality for bacteria and archaea, don&#8217;t generally propagate through low-activity populations.  So the haloarchaea that dominate in these lakes may have hit upon a winning evolutionary strategy of slow growth under the protection of a particularly extreme environment.</p>



<div class="wp-block-image"><figure class="aligncenter size-large is-resized"><img data-recalc-dims="1" loading="lazy" decoding="async" src="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0007-m.jpg?resize=512%2C262&#038;ssl=1" alt="" class="wp-image-3244" width="512" height="262" srcset="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0007-m.jpg?resize=1024%2C523&amp;ssl=1 1024w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0007-m.jpg?resize=300%2C153&amp;ssl=1 300w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0007-m.jpg?resize=768%2C392&amp;ssl=1 768w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0007-m.jpg?resize=1536%2C785&amp;ssl=1 1536w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0007-m.jpg?resize=2048%2C1046&amp;ssl=1 2048w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0007-m.jpg?w=1280&amp;ssl=1 1280w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2021/03/emi15440-fig-0007-m.jpg?w=1920&amp;ssl=1 1920w" sizes="auto, (max-width: 512px) 100vw, 512px" /><figcaption>Single-cell activities as measured by nano-SIMS.  From Klempay et al. 2021.</figcaption></figure></div>
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		<title>OAST visits the South Bay Saltworks</title>
		<link>https://www.polarmicrobes.org/oast-visits-the-south-bay-saltworks/</link>
					<comments>https://www.polarmicrobes.org/oast-visits-the-south-bay-saltworks/#respond</comments>
		
		<dc:creator><![CDATA[Jeff]]></dc:creator>
		<pubDate>Sun, 11 Aug 2019 04:02:35 +0000</pubDate>
				<category><![CDATA[OAST]]></category>
		<category><![CDATA[Research]]></category>
		<guid isPermaLink="false">http://www.polarmicrobes.org/?p=2768</guid>

					<description><![CDATA[Last week we were busy hosting the inaugural Oceans Across Space and Time (OAST, @Space Oceans OAST on Facebook) combined first year meeting and field effort. It was a crazy week but a huge success. The goal of OAST is &#8230; <a href="https://www.polarmicrobes.org/oast-visits-the-south-bay-saltworks/">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
										<content:encoded><![CDATA[
<p>Last week we were busy hosting the inaugural <a href="https://oast.eas.gatech.edu/">Oceans Across Space and Time</a> (OAST, @Space Oceans OAST on Facebook) combined first year meeting and field effort.  It was a crazy week but a huge success.  The goal of OAST is to improve life detection efforts on future NASA planetary science missions by better understanding how biomass and activity are distributed in habitats that mimic past or present &#8220;ocean worlds&#8221;.  Ocean worlds is a concept that has gained a lot of traction in the last few years (see our Roadmap to Ocean Worlds synthesis paper <a href="https://www.liebertpub.com/doi/full/10.1089/ast.2018.1955">here</a>).  We have a lot of past or present ocean worlds in our solar system (Earth obviously, but also Mars, Europa, Enceledus, and a whole host of other ice-covered moons), and oceans are seen as a natural feature of planetary bodies that are more likely to host life.  Our first year effort focused on some open-ocean training for the <a href="http://schmidt.eas.gatech.edu/project-rise-up/">Icefin</a> robot, designed for exploring the protected spaces below floating ice shelves, and a multi-pronged investigation of the <a href="https://en.wikipedia.org/wiki/South_Bay_Salt_Works">South Bay Salt Works</a>.</p>



<figure class="wp-block-image"><img data-recalc-dims="1" loading="lazy" decoding="async" width="640" height="427" src="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3540.jpg?resize=640%2C427&#038;ssl=1" alt="" class="wp-image-2769" srcset="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3540.jpg?resize=1024%2C683&amp;ssl=1 1024w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3540.jpg?resize=300%2C200&amp;ssl=1 300w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3540.jpg?resize=768%2C512&amp;ssl=1 768w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3540.jpg?w=1280&amp;ssl=1 1280w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3540.jpg?w=1920&amp;ssl=1 1920w" sizes="auto, (max-width: 640px) 100vw, 640px" /><figcaption>The South Bay Salt Works in Chula Vista, CA.  A truly amazing site for exploring how microbial activity and biomass are distributed across environmental gradients.</figcaption></figure>



<p>The Salt Works are an amazing environment that my lab has visited previously (see <a href="https://www.polarmicrobes.org/hunting-for-halophiles-at-the-south-bay-saltworks/">here</a> and <a href="https://www.polarmicrobes.org/south-bay-saltworks/">here</a>).  Our previous work in this environment has raised more questions than answers, so it was great to hit a few of our favorite spots with a top-notch team of limnologists, microbiologists, geochemists, and engineers. </p>



<figure class="wp-block-image"><img data-recalc-dims="1" loading="lazy" decoding="async" width="640" height="427" src="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3300.jpg?resize=640%2C427&#038;ssl=1" alt="" class="wp-image-2770" srcset="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3300.jpg?resize=1024%2C683&amp;ssl=1 1024w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3300.jpg?resize=300%2C200&amp;ssl=1 300w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3300.jpg?resize=768%2C512&amp;ssl=1 768w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3300.jpg?w=1280&amp;ssl=1 1280w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3300.jpg?w=1920&amp;ssl=1 1920w" sizes="auto, (max-width: 640px) 100vw, 640px" /><figcaption>Part of the OAST team setting up next to some very high salinity NaCl-dominated lakes.  The pink color of the lakes is the true color, and is common to high salinity lakes.  The color comes from carotenoid pigments in the halophilic archaea that dominate these lakes.</figcaption></figure>



<figure class="wp-block-image"><img data-recalc-dims="1" loading="lazy" decoding="async" width="640" height="427" src="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3491.jpg?resize=640%2C427&#038;ssl=1" alt="" class="wp-image-2771" srcset="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3491.jpg?resize=1024%2C683&amp;ssl=1 1024w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3491.jpg?resize=300%2C200&amp;ssl=1 300w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3491.jpg?resize=768%2C512&amp;ssl=1 768w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3491.jpg?w=1280&amp;ssl=1 1280w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3491.jpg?w=1920&amp;ssl=1 1920w" sizes="auto, (max-width: 640px) 100vw, 640px" /><figcaption>This is what I love about NASA &#8211; it&#8217;s an agency that develops the most sophisticated technology in the history of human civilization, but isn&#8217;t afraid to use a rock when the situation calls for it.  Spanning several millennia of technological advancement is Maddie Myers (LSU), with Natalia Erazo (SIO) and Carly Novak (Georgia Tech) in the background.</figcaption></figure>



<figure class="wp-block-image"><img data-recalc-dims="1" loading="lazy" decoding="async" width="640" height="427" src="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3193.jpg?resize=640%2C427&#038;ssl=1" alt="" class="wp-image-2772" srcset="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3193.jpg?resize=1024%2C683&amp;ssl=1 1024w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3193.jpg?resize=300%2C200&amp;ssl=1 300w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3193.jpg?resize=768%2C512&amp;ssl=1 768w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3193.jpg?w=1280&amp;ssl=1 1280w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3193.jpg?w=1920&amp;ssl=1 1920w" sizes="auto, (max-width: 640px) 100vw, 640px" /><figcaption>Carly Novak (Georgia Tech) sampling salts with Peter Doran (LSU) and his &#8220;surfboard of science&#8221; in the background.</figcaption></figure>



<figure class="wp-block-image"><img data-recalc-dims="1" loading="lazy" decoding="async" width="640" height="427" src="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3283.jpg?resize=640%2C427&#038;ssl=1" alt="" class="wp-image-2773" srcset="https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3283.jpg?resize=1024%2C683&amp;ssl=1 1024w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3283.jpg?resize=300%2C200&amp;ssl=1 300w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3283.jpg?resize=768%2C512&amp;ssl=1 768w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3283.jpg?w=1280&amp;ssl=1 1280w, https://i0.wp.com/www.polarmicrobes.org/wp-content/uploads/2019/08/DSC_3283.jpg?w=1920&amp;ssl=1 1920w" sizes="auto, (max-width: 640px) 100vw, 640px" /><figcaption>Doug Bartlett (SIO), a little out of his element at only 1 atm.</figcaption></figure>



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