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Recent Posts
- Local installation of DeepTMHMM December 3, 2025
- A simple solution for continuous, real-time monitoring with the Seabird SUNAV2 over RS232 March 22, 2025
- New postdoctoral position in pathogen ecology September 25, 2024
- Seeking postdoc in phytoplankton ecology August 27, 2024
- Recent blog post by PhD student Beth Connors February 13, 2024
- New paper: Antarctic metagenomes reveal novel microbial diversity May 19, 2023
- New postdoctoral research opportunity! April 7, 2023
- Alignment and phylogenetic inference with hmmalign and RAxML-ng May 31, 2022
- New paper on using machine learning to predict biogeochemistry from microbial community structure February 12, 2022
- Lab manager position open! January 15, 2022
Category Archives: Uncategorized
Future of ice jobs at the UW
There are two great polar ecology jobs posted at the University of Washington right now. It’s rare to find academic jobs specific to the polar regions so this will be a great opportunity for someone out there! The new positions … Continue reading
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In defense of observations
This week I’m at the biennial meeting of the International Society of Microbial Ecologists (ISME) in Seoul. During lunch yesterday there was a special “bird’s eye view” talk given by Dr. James Prosser, a preeminent microbiologist from the University of … Continue reading
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The history of sea ice microbial ecology
Doctoral dissertations typically include an introduction, a Chapter 1 that summarizes the work and the motivation for undertaking it. Last week I submitted my dissertation to the UW and the introduction, which includes citations from some long-ago work on psychrophiles … Continue reading
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New website address!
Pending the (hopeful) defense of my dissertation on August 8th I’ll be starting a postdoc at the Lamont-Doherty Earth Observatory at Columbia University. Since there’s generally a little downtime between turning in a thesis and defending it I’ve migrated this … Continue reading
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Some thoughts on modeling
I’m not a modeler, but I played one once in grad school. Or at least that’s how I’m feeling at the moment. I’m currently working on the last chapter of my dissertation and it became necessary to explore the mechanisms … Continue reading
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Dispatch from AAAS-CASE
As mentioned in my previous post I spent the last three days at the AAAS-CASE workshop in Washington, DC. The purpose of the workshop was to introduce junior scientists to the legislative process and the ins and outs of science … Continue reading
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AAAS-CASE
I’m currently in Washington, DC for the pilot AAAS-CASE (Catalyzing Advocacy and Science in Engineering) workshop. I wanted to share a great short video that was sent to the attendees before the workshop. http://www.innovationdeficit.org/ The video describes the “innovation deficit”, … Continue reading
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Online bioinformatics courses
Speaking of the UW Oceanography Bioinformatics Seminar… one of the seminar participants just sent around a Plos Computational Biology that lists a complete curriculum’s worth of free online bioinformatics courses. Some of the courses are more suitable for computer scientists … Continue reading
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Budget Woes
Everyone’s impacted by the shutdown in the federal government in some way. First and foremost are federal employees, including research scientists at NOAA, NASA, and the other research-minded federal agencies. Not only are these individuals locked out of their workplaces, … Continue reading
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A new model for scientific careers
Traditionally there were three ways that, having acquired a PhD, a researcher could continue with their scientific career: 1) Seek a faculty job at an academic institution (typically a university). University jobs are wonderful in that they allow for complete … Continue reading
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