https://www.polarmicrobes.org/how-i-learned-to-stop-worrying-and-love-subsampling-rarifying/ Marine Microbial Ecology Tue, 18 Oct 2016 00:58:24 +0000 hourly 1 https://wordpress.org/?v=6.9 https://www.polarmicrobes.org/how-i-learned-to-stop-worrying-and-love-subsampling-rarifying/#comment-313 Thu, 14 Jul 2016 13:42:31 +0000 http://www.polarmicrobes.org/?p=1713#comment-313 Thanks Colleen, glad to hear that ordination was consistent between analyses. Out of curiosity how did you treat your data? Did you have biological replicates?

]]> https://www.polarmicrobes.org/how-i-learned-to-stop-worrying-and-love-subsampling-rarifying/#comment-312 Tue, 12 Jul 2016 20:24:35 +0000 http://www.polarmicrobes.org/?p=1713#comment-312 Nice post, Jeff. I struggle with this too. My current lab has been swayed by the McMurdie and Holmes paper, so in a paper I am currently working on i didn’t subsample. But I still feel a bit uneasy about that…but took solace in the fact that i found no statistical difference between subsampled and non-subsampled ordinations. Anyway, nice post!

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