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- Local installation of DeepTMHMM December 3, 2025
- A simple solution for continuous, real-time monitoring with the Seabird SUNAV2 over RS232 March 22, 2025
- New postdoctoral position in pathogen ecology September 25, 2024
- Seeking postdoc in phytoplankton ecology August 27, 2024
- Recent blog post by PhD student Beth Connors February 13, 2024
- New paper: Antarctic metagenomes reveal novel microbial diversity May 19, 2023
- New postdoctoral research opportunity! April 7, 2023
- Alignment and phylogenetic inference with hmmalign and RAxML-ng May 31, 2022
- New paper on using machine learning to predict biogeochemistry from microbial community structure February 12, 2022
- Lab manager position open! January 15, 2022
Tag Archives: phylogenetic
Alignment and phylogenetic inference with hmmalign and RAxML-ng
RAxML is one of the most popular programs around for phylogenetic inference via maximum likelihood. Similarly, hmmalign within HMMER 3 is a popular way to align amino acid sequences against HMMs from Pfam or created de novo. Combine the two … Continue reading
